D

DNA

sequence identification/assignment and base-pairing restraints for RNA/DNA models in EM and MX

BioFoundry is an open-source computational biology platform designed to streamline primer design, genome validation, and CRISPR-aware experiment planning. It combines traditional bioinformatics tools with modular, extensible architecture and AI-ready workflows to support researchers from raw DNA sequence input through to validated experimental design. Built under the AGPL-3.0+ license, it emphasizes transparency, reproducibility, and community-driven development — enabling collaborative innovation in modern genetic research. https://roxanneardary.com/biofoundry/

Please see below for a list of available resources

AmpCheck investigates primer/probe - template matching and return amplicon related information.

https://dnarna.gitlab.io/ampcheck

Software to compute the melting temperature of nucleic acid duplexes

RepeatGrower identify repeating k-mers in a genome and grows them until their occurrences decline.

Bioinformatics in Python - DNA Toolkit YouTube Channel: https://t.ly/RdzG3

A visualization software for 3D chromatin chain 🧬 by University of Applied Sciences Stralsund.

Live Demo                  Live Demo (BETA)

A set of tools to do biological operations, written for Nim.

A piece of software that can simulate DNA inheritance between cousins and ancestors, enabling users to generate the distributions of shared DNA across generations and between complex cousin matches.

Tool used for easier installation, maintenance and update of idena nodes

rebelCoder's Bioinformatics course in Python: Rosalind challenges YouTube channel: https://t.ly/RdzG3

Haruspex is a Convolutional Neural Network capable of recognizing and predicting secondary structure elements and nucleotides in Cryo-EM reconstruction density.

Don't use this repo. Use the fork pdf-generators.

This is a project I developed while on college for some PhD people involved in DNA samplings.

The code is simple and the interface is much simplier. Hope you find it useful! Any feedback is welcome!

Some Bioinformatics example about dna, genes and other.