B

bioinformatics

OTP, One Touch Pipeline, Documentation at https://one-touch-pipeline.gitlab.io/otp/

Common Workflow Language - computational workflows @ UNLOCK

Armadillo: fast C++ library for linear algebra (matrix maths) & scientific computing - https://arma.sourceforge.net

BioInterface is a Biopython based package that extracts Protein-DNA interfaces in a PDB structures.

PDBNucleicAcids is a Biopython based package that constructs and represent all nucleic acids in a PDB structure, with a special focus on base-pair representation.

SeqExtract searches annotated genomes for keywords and extract corresponding fasta records

Bioinformatics pipeline for LONELY gene family analysis across plant species

A bioinformatic pipeline for identifying giant viruses and Preplasmiviricota viruses in metagenomic data.

This project classifies brain cancer using gene expression data. It includes preprocessing, class balancing, feature selection, and training models (Random Forest, XGBoost, SVM) in pipelines to compare performance to better insights in biomedical informatics and cancer research.

A simple bash script to install bioinformatics tools that require x86_64 architecture.

SonicParanoid is a stand-alone software tool for the identification of orthologous relationships among multiple species.

For details go to the wiki-page

An R package to extrapolate phenotypic fingerprint from RNAseq to determine cell culture media.

Main monorepo for GenomicOS

DAPCy is a Python implementation of the Discriminant Analysis of Principal Components (DAPC) method for population genetics.

https://uhasselt-bioinfo.gitlab.io/dapcy/

EnergySync is a Python CLI tool for estimating caffeine effects and productivity.

a JavaScript conversion tool for Open Data Science URIs

Matlab toolbox to generate xTop intensities from peptide-level intensities. It can also generate TopPepN (N=1,2,3..) intensities. The most updated version is v2.0. A Python version of the code is present in version 1.2.

This is an academical project

Automated drug repurposing workflow for rare diseases – using Flask, Monarch API, DGIdb API and XGboost.