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A working copy of DNA Features Viewer for plotting annotated genome maps from GenBank and GFF records. Vendored third-party code — see LICENCE.txt.

Parse and manipulate SMILES chemical structure notation in Python.

The 2024 edition of the UniProt activity: a containerised Python and web application for protein lookups.

Uniprot is a freely accessible database of protein sequences with many entries derived from genome sequencing projects.

Molecular docking in Python: dock ligands and receptors, generate binding poses and export the results to view them with NGL Viewer or Mol*.

Sequence alignment is a computational method that allows biological information to be inferred solely from the information contained in sequences.

A full-stack gene-expression application with a Python server and a React client.

Retrieve article metadata and abstracts from the PubMed biomedical literature database in Python, using metapub.

A demo bioinformatics web application with a Python API and a TypeScript client, runnable as a container.

Analyse protein structure and dynamics from Python with ProDy.

Uniprot is a freely accessible database of protein sequences with many entries derived from genome sequencing projects.

Primers delimit the region of DNA that PCR will copy.

Draw a protein in three dimensions by reading the atom coordinates from a PDB file.

Interactive charts for biological data with Plotly in Python.

Analysing biological datasets with the pandas DataFrame library in Python.

Exam material for the bioinformatics module: pairwise alignment and UniProt protein retrieval in Python.

Meeko prepares the input for vina and processes its output.

Python exercises in multiple sequence alignment.

The most common DNA, RNA and protein sequencing text formats in bioinformatics — FASTA and Genbank — plus a review of other well-known ones.

Representing molecules on a computer: SMILES, InChI, and file formats.