microbiology

AmpCheck investigates primer/probe - template matching and return amplicon related information.

https://dnarna.gitlab.io/ampcheck

An R package to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with antibiotic data by using evidence-based methods.

This is the script for the bacterial FHN model that we reported in Startford et al., PNAS (2019). https://doi.org/10.1073/pnas.1901788116

Bayesian modeling of ammonia oxidation in microcosm experiments with stream sediments

Microbial Bioinformatics Hub is an open-source, collaborative space for researchers and students to find, learn and share knowledge, methods and tools related to analyzing microbiological data.

Various designs for labware to use in microbiology laboratory, including customisable agar dishes, inoculation loops for plating bacterial samples, and pin replicators to plate bacterial samples onto multiple agar dishes.