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bioinformatics

Common Workflow Language - computational workflows @ UNLOCK

SeqExtract searches annotated genomes for keywords and extract corresponding fasta records

A bioinformatic pipeline for identifying giant viruses and Preplasmiviricota viruses in metagenomic data.

a JavaScript conversion tool for Open Data Science URIs

Automated drug repurposing workflow for rare diseases – using Flask, Monarch API, DGIdb API and XGboost.

Proteinortho is a tool to detect orthologous genes within different species. (Download)

DAPCy is a Python implementation of the Discriminant Analysis of Principal Components (DAPC) method for population genetics.

https://uhasselt-bioinfo.gitlab.io/dapcy/

Little utilities to work with fasta files.

DuploMap is designed to improve precision and recall of long-read alignments in segmental duplications.

BioInterface is a Biopython based package that extracts Protein-DNA interfaces in a PDB structures.

PDBNucleicAcids is a Biopython based package that constructs and represent all nucleic acids in a PDB structure, with a special focus on base-pair representation.

SonicParanoid is a stand-alone software tool for the identification of orthologous relationships among multiple species.

For details go to the wiki-page

ELofssonlab Sars-Cov-2 projects

TMalign wrapper for PyMol

A test GitHub repository for a set of client/server python scripts (as part of the Scientific Programming class).

AmpCheck investigates primer/probe - template matching and return amplicon related information.

https://dnarna.gitlab.io/ampcheck