R

R

R Tools for Text Matrices

Corpora for text analysis

Fit parametric models for time-to-event data that show an initial 'incubation period', i.e., a variable phase where the hazard is zero. The delayed Weibull distribution serves as the foundational data model. The specific method of MPSE (maximum product of spacings estimation) or different variants of MLE (maximum likelihood estimation) are implemented for parameter estimation. Bootstrap confidence intervals for parameters and significance tests in a two group setting are provided as well.

EcoCommons R package for running complete species distribution modelling workflows. Utilised by the https://www.ecocommons.org.au/ platform.

This is an R package for downloading spatial and temporal data from the Catchment Attributes and Meteorology for Large Sample Studies, Chile Dataset (CAMELS-CL) https://camels.cr2.cl/. Details of the dataset are provided in https://doi.org/10.5194/hess-22-5817-2018.

Materials and resources for the teaching unit "Morphometrics with R" (University of Bordeaux, Summer School). Website.

Ce projet a pour but d'analyser comment le relief naturel et les pressions anthropiques, comme l'urbanisation ou l'agriculture, influencent la répartition des poissons en France. En nous appuyant sur les données de l'OFB, nous cherchons à comprendre dans quelle mesure la modification des paysages favorise la survie d'espèces tolérantes au détriment des plus sensibles.

Ce projet a été réalisé sur R et utilise des données piscicoles.

Materials on various sections in Computer Science (CS). 🎓

Ce projet de groupe met en pratique les notions vues en cours et travaux pratiques à travers l’analyse d’un jeu de données protéomique (≈2000 protéines issues de cellules hépatiques) et l'utilisation de R. Les six échantillons, répartis en conditions contrôle et traitée, ont permis de réaliser des analyses exploratoires et différentielles afin de visualiser la structure globale des données, vérifier la cohérence des réplicats et identifier les protéines dont l’expression varie significativement entre conditions.

This script helps you find performance bottlenecks in downloaded, raw CI job logs

CornerstoneR package provides generic R scripts which enable you to use existing R routines in Cornerstone.

Lab & Hyperparameter optimization in R

Shoot a JupyterLab | marimo | VS Code/VSCodium | Pluto.jl | Matlab | SSHD | ... server to a (remote) Slurm allocation and talk to it via your local browser. Runs locally (Linux, Mac, Windows (WSL)) or remotely (e.g. as Remote or ProxyCommand configured in ~/.ssh/config) or inside an interactive Slurm session. One Bash script for both tasks: as a wrapper it starts itself as an sbatch script in a Slurm job.

Course notes for Udemy Statistics for Data Analysis Using R

https://www.udemy.com/course/statistics-using-r/

An R package to simplify the analysis and prediction of Antimicrobial Resistance (AMR) and to work with antibiotic data by using evidence-based methods.

Website for the Graduate school course, "Intermediate R: Writing a reproducible article with R and Quarto"

TapWaterPollData contains code written in R for processing the SISE-EAUX database (code by Zlatka Avramova-Gras), created in the framework of the EXPOTHYR project supported by Health Data Hub, led by Dr. Sylvain Chamot (University hospital Amiens (France)).

📦 spatsoc is an R package for detecting spatial and temporal groups in GPS relocations. http://spatsoc.robitalec.ca