neuroscience

Opticka is an experiment manager built on top of the Psychophysics toolbox (PTB) for MATLAB. It runs experimental tasks using flexible state machine logic and easily does dynamic methods-of-constants type experiments with full behavioural control. It uses a class system to create simple to use visual stimuli using experimenter friendly units. Opticka can use an Eyelink eyetracker, Plexon Omniplex neurophysiology data collection and general TTL control using either a cheap LabJack (ms precision) or DataPixx/Display++ (µs precision). It contains analysis routines linked to Fieldtrip for spike and LFP data easily parsed in terms of the experimental variables.

CLI tool to convert behavior & calcium imaging data to the NWB standard file format

NeuroML-based neural simulator

Source-level EEG functional connectivty

Supplementary material associated with the book: "Probabilistic Spiking Neuronal Nets -- Data, Models and Theorems" by Antonio Galves, Eva Löcherbach and Christophe Pouzat.

Lecture material for the Bootcamp of Modeling for Master Neuronal and Cognitive Systems, Université Côte d'Azur, 2022.

This is a mirror of IndiScale's BIDS Cfood repo

Spike sorting course / tutorial the "Do It Yourself" way

Showcase of the Daste odor set 2021-11 dataset

An introductory lecture on spike trains analysis

Laterality Indices calculator

Simulations of the temporally interfering electric field distribution using realistic brain models from the Population Head Model (PHM) repository, with the aim of creating a personalized (optimized) treatment planning.

Starter template for the Tonic research project structure

Structured Big data framework based on Apache Spark for storing and manipulating large scale multi channel neurophysiological recording data

BSc thesis at the Department of Physics of the Aristotle University of Thessaloniki, supervised by prof. Theodoros Samaras.

Python package for parsing Plexon's PLX data files (neurophysiological recordings).

The true about the pseudo dictatorship called Illuminati, the synthetic telepathy network and the nowadays hacker scene and the techno music network. But in reality is the old aristocratic telecommunications system. A site full of violence.

Analysis code for sequence analyses reported in Schuck & Niv 2019, "Sequential Replay of Non-spatial Task States in the Human Hippocampus"