Explore projects
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FLI_Bioinfo / Clostyper
BSD 3-Clause "New" or "Revised" LicenseClostridia characterization and typing pipeline
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nf-community / swnts
MIT LicenseThe analysis repository for the Schwannomatosis Open Research Collaborative (SWNTS).
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DKFZ-ODCF / igv-crawler
MIT LicenseCrawl any filesystem for genome data, providing one-click opening in IGV
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Insight into the 3D organization of the genome, this question arises: Are the genes for the corresponding protein complexes, whose transcription needs to be orchestrated, located in the same 3D-chromatin domain? Using human protein complex database and high-resolution Hi-C data on normal and cancer human cells, I elaborated an R-based approach to normalize the data and statistically test the association to TAD (topologically associating domain) in my bioinformatics master's work.
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A Machine Learning approaches to identify genetic variants associated with disease
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Pablo S C Santos / ACACIA
MIT LicenseAllele CAlling proCedure for Illumina Amplicon sequencing data.
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LPCDRP / mvp
Otherthe motif-variant probe: detect creation/destruction of sequence motifs as a result of mutations https://lpcdrp.gitlab.io/mvp
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CNIO Bioinformatics Unit / TRIFID
GNU General Public License v3.0 onlyMigrated to https://github.com/fpozoc/trifid
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cgps / vista
MIT LicenseVibrio cholerae sequence type analysis. Identifies virulence-associated loci and assigns biotypes and serogroups.
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batch data download from Genbank or RefSeq
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fasta toolkit for fasta file processing and modification
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Use a suffix array structure in C++ to index genomic sequences.
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coregenomics / polymerasewave
GNU General Public License v3.0 or laterMeasure genomic intervals travelled by polymerase https://coregenomics.gitlab.io/polymerasewave/
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This repository contains files and projects created from different Coursera courses and Rosalind platform.
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