modelling

Utopia is a comprehensive modelling framework for complex adaptive systems.

EcoCommons R package for running complete species distribution modelling workflows. Utilised by the https://www.ecocommons.org.au/ platform.

MULTIGRIS ("mgris") is a Bayesian multi-dimensional grid search using PyMC to extract the posterior distributions of primary grid parameters and predict unobserved parameters/observables.

Python API for inversion/modelling of electromagnetic data. See the documentation.

paramspace is a python package that makes it easy to iterate over a multidimensional parameter space, where each point corresponds to a dict-like object. It integrates tightly with YAML to make definition of parameter spaces and sweeps super simple.

For a usage example, see utopya and the Utopia Project.

https://www.blender.org/

RNA fragment assembly with secondary structure and experimental restraints

Ontologies related to computational modelling and numerical simulation

Standard formats, often in XML, to encode models and related information

Matlab tools to generate gravel "packings" for 3D GPR simulations

Classes to set up and run a simple numerical model in Python

Implements models of collective systems using the Utopia modelling framework.

🚧 (Work in progress.)

deeevoLab — short for (devo/ego/eco)-evo Laboratory — is (or rather: was) a Python framework to investigate evolutionary systems.

Ideas from this project were taken up in the conceptualisation of Utopia and dantro.

Model corresponding to the report delivered by group F for MSCI 580

StrathE2E Ecosystem Model

This projects explores how to build a Readthedocs documentation.

Scratched surface (height matrix) procedural generation

Modelling shielded temperature sensors - an assessment of the Netatmo citizen weather station

Thesis submitted for the degree of Candidatus Scientiarum at the University of Oslo in June 1999.