collective-dynamics

A toolkit for the quantitative analysis of so-called "fish waves" — patterns on the water surface resulting from the collective predator defence of large shoals of sulphur mollies. To study this behavior, FishWaveAnalysis allows to annotate and process video recordings made in the field and subsequently extract quantitative observables of the waving behavior.

Makes use of the utopya framework for implementation of the video analysis pipeline.

Implements models of collective systems using the Utopia modelling framework.

🚧 (Work in progress.)