U

utopia-project

A toolkit for the quantitative analysis of so-called "fish waves" — patterns on the water surface resulting from the collective predator defence of large shoals of sulphur mollies. To study this behavior, FishWaveAnalysis allows to annotate and process video recordings made in the field and subsequently extract quantitative observables of the waving behavior.

Makes use of the utopya framework for implementation of the video analysis pipeline.

Utopia is a comprehensive modelling framework for complex adaptive systems.

A versatile simulation runner and manager.

utopya also serves as the simulation management and evaluation frontend for the Utopia framework.

Read-only mirror of a model of collective decision-making using spin interactions on graphs (by @blsqr), studied in collaboration with Yurij Holovatch, Pawel Romanczuk, Abi Tenenbaum, Petro Sarkanych and Marjana Krasnytska.

dantro is a python package for handling, transforming, and visualizing hierarchically organized data.

Integrated into data-intensive projects, it supplies an easy way to define a customizable, configuration-based data processing pipeline. See utopya for an example.

Implements models of collective systems using the Utopia modelling framework.

🚧 (Work in progress.)

Evolutionary ecosystem models that @blsqr studied as part of his PhD project (2018-21).