bioinformatics
Projects with this topic
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AmpCheck investigates primer/probe - template matching and return amplicon related information.
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Common Workflow Language - computational workflows
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Plynk is a Python wraper for the PLINK software plus some convenience tools to enable a seamless workflow of Plink in Python.
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practice tasks for "Algorithms for Sequence Analysis"
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SonicParanoid is a stand-alone software tool for the identification of orthologous relationships among multiple species.
For details go to the wiki-page
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Proteinortho is a tool to detect orthologous genes within different species. (Download)
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Tavit (Trimming, Alignment and Variant Identification Tool) pipeline made in Python with Anaconda.
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Scripts for pathway enumeration and random flux sampling of metabolite exchanges in microbial models.
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Python scripting for molecular dynamics simulation using GROMACS
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Master thesis - Deep learning-based pairwise alignment of protein sequences using transformer architecture.
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Bioinformatics - Pairwise sequence alignment using hidden Markov model.
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