RNA-Seq

Splicing analysis: Extract from mapped RNA-Seq-reads information on intron removal-order for exons genome-wide, and estimate their PSI values (percent-spliced-in) and PIR values (percent-intron-retention) of their flanking introns.

DEGs analysis of bulk RNA-seq data using edgeR

Allows table cleaning containing RNAseq data (number of counts per genes).

StCsm sequencing data analysis in R programming language.

StCsm next-generation sequencing data processing Nextflow pipeline.