bioinformatics
Projects with this topic
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Common Workflow Language - computational workflows
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OTP, One Touch Pipeline, Documentation at https://one-touch-pipeline.gitlab.io/otp/
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SonicParanoid is a stand-alone software tool for the identification of orthologous relationships among multiple species.
For details go to the wiki-page
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Armadillo: fast C++ library for linear algebra (matrix maths) & scientific computing - https://arma.sourceforge.net
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AmpCheck investigates primer/probe - template matching and return amplicon related information.
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SeqExtract searches annotated genomes for keywords and extract corresponding fasta records
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A tree-based orthology inference program with additional functionality for reducing contamination.
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DAPCy is a Python implementation of the Discriminant Analysis of Principal Components (DAPC) method for population genetics.
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DElite is a novel R package for DE analysis. With a single command line, DE returns the output of edgeR, limma, dearseq and DESeq2, both as individual results and as a combined output. DElite offers user-friendly functionality, accompanied by a detailed report, and allows advanced users to customize their analyses to a high degree.
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Proteinortho is a tool to detect orthologous genes within different species. (Download)
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Plynk is a Python wraper for the PLINK software plus some convenience tools to enable a seamless workflow of Plink in Python.
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practice tasks for "Algorithms for Sequence Analysis"
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Matlab toolbox to generate xTop intensities from peptide-level intensities. It can also generate TopPepN (N=1,2,3..) intensities. The most updated version is v2.0. A Python version of the code is present in version 1.2.
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Unix toolkit for feature analysis of alternative splicing events. Includes basic functions for manipulating tables, extraction of exon and intron-related features, discriminate feature analysis, motif maps for RNA-binding proteins, and more.
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Nextflow pipeline for DamID analysis
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Software to compute the melting temperature of nucleic acid duplexes
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