Tags

v3.4.5

Combine-outputs empty column and column type difference errors

v3.4.4

Fix combine-outputs timeout bug

v3.4.3

- Build-taxonomy missing nodes bug (https://gitlab.com/treangenlab/emu/-/issues/6)

v3.4.2

- add unite databases (untested)
- combine-outputs function includes full taxonomy (with option to --split-tables)

v3.4.1

Combine outputs functionality

v3.4.0

Custom database to handle input taxonomy as a list of lineages rather than NCBI names.dmp and nodes.dmp files

v3.3.1

- fix collapse-taxonomy bug

v3.3.0

- add flag option to keep read assignment distributions as a .tsv file
- remove use of pd.append for unassigned read count due to future deprecation warning

v3.2.0

Add --output-unclassified option

v3.1.0

Add option to keep read count estimates and unclassified counts in output

v3.0.0

v3.0.0

v2.0.1

Reduce time and memory consumption

v2.0.0

Normalize cigar counts to the longest alignment for each read

v1.0.3

v1.0.2

v1.0.1

Download database separately for conda installation

v1.0.0