feature: use custom accession to annotation map file
This task type directly maps accessions from the user provided proteomic search result to annotations, neglecting the sequence.
Added as new prog parameter, example task (also added to templates/config/config.yaml):
- prog: acc2annot_mapper
type: taxonomic
shortname: fun_from_my_file
db_type: custom_map
params:
path: /path/to/accession2annotation_map.tsv
Example table (*.tsv):
#acc name_of_level1 name_of_level2 name_of_level3
KZK33282.1 Bacteria Firmicutes Bacilli
NP_268346.1 Bacteria Firmicutes Bacilli
WP_003131952.1 Bacteria Firmicutes Bacilli
PKC80086.1 Bacteria Actinobacteria Bifidobacteriales
XP_963622.1 Eukaryota Ascomycota Sordariomycetes
WP_000665196.1 Bacteria Proteobacteria Gammaproteobacteria
WP_000665196.1 Bacteria Proteobacteria Gammaproteobacteria group
Edited by Henning Schiebenhöfer