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introduce autotools deprecation warning

Martin Lueders requested to merge deprecate_autotools into hotfix-14.1

Description

As autotools will be deprecated in the future, we are now printing a warning (with user confirmation) at the end of the configure script. This warning can be disabled with the --enable-silent_deprecation flag.

News snippet

Deprecate autotools.

Checklist

  • I have checked that my code follows the Octopus coding standards
  • I have added tests for all the new features added in this request.

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