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coot
Ping @julozi @jean-christophe.haessig
Je vais faire ici un état des lieux des différentes version de coot :
Etat des lieux des versions
coot/0.8.2
$ coot
INFO: Could not find any nv files on this host!
There are 130 data in /opt/coot-0.8.2/share/coot/lib/data/monomers/list/mon_lib_list.cif
There are 2 data in /opt/coot-0.8.2/share/coot/lib/data/monomers/a/ALA.cif
There are 2 data in /opt/coot-0.8.2/share/coot/lib/data/monomers/a/ASP.cif
There are 2 data in /opt/coot-0.8.2/share/coot/lib/data/monomers/a/ASN.cif
[...]
There are 2 data in /opt/coot-0.8.2/share/coot/lib/data/monomers/d/DT.cif
There are 2 data in /opt/coot-0.8.2/share/coot/lib/data/monomers/h/HOH.cif
INFO:: Reading coordinate file: /opt/coot-0.8.2/share/coot/standard-residues.pdb
PDB file /opt/coot-0.8.2/share/coot/standard-residues.pdb has been read.
Spacegroup: P 1
*** Cannot find the double-buffered visual.
*** Trying single-buffered visual.
*** No appropriate OpenGL-capable visual found.
/opt/coot-0.8.2/bin/guile: error while loading shared libraries: libguile.so.17: cannot open shared object file: No such file or directory
coot-phenix/0.9.8.1-1.18.2
$ coot
INFO:: Reading coordinate file: /opt/coot-0.8.9.1/share/coot/standard-residues.pdb
PDB file /opt/coot-0.8.9.1/share/coot/standard-residues.pdb has been read.
Spacegroup: P 1
libGL error: unable to load driver: swrast_dri.so
libGL error: failed to load driver: swrast
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/05_Hotel_Icon_Hair_Salon.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/3-c-new.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/3-c-other.svg?
[...]
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/water-diff-map.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/water-drop.svg?
(coot-bin:32139): Gdk-ERROR **: 15:34:00.339: The program 'coot-bin' received an X Window System error.
This probably reflects a bug in the program.
The error was 'GLXBadContext'.
(Details: serial 327 error_code 160 request_code 149 minor_code 6)
(Note to programmers: normally, X errors are reported asynchronously;
that is, you will receive the error a while after causing it.
To debug your program, run it with the --sync command line
option to change this behavior. You can then get a meaningful
backtrace from your debugger if you break on the gdk_x_error() function.)
/opt/coot-0.8.9.1/bin/coot: line 284: 32139 Trace/breakpoint trap (core dumped) $coot_bin "$@"
guile: error while loading shared libraries: libltdl.so.3: cannot open shared object file: No such file or directory
MR en cours mais qui a besoin de l'amour d'un dev
coot-phenix/0.9.8.1-1.19rc4
INFO:: Reading coordinate file: /opt/coot-0.8.9.1/share/coot/standard-residues.pdb
PDB file /opt/coot-0.8.9.1/share/coot/standard-residues.pdb has been read.
Spacegroup: P 1
libGL error: unable to load driver: swrast_dri.so
libGL error: failed to load driver: swrast
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/05_Hotel_Icon_Hair_Salon.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/3-c-new.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/3-c-other.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/3-c.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/4-c.svg?
[...]
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/torsion-general.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/triple.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/undo-1.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/unknown-blob.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/water-diff-map.svg?
Error loading icon: Couldn?t recognize the image file format for file ?/opt/coot-0.8.9.1/share/coot/pixmaps/water-drop.svg?
(coot-bin:21931): Gdk-ERROR **: 18:42:16.098: The program 'coot-bin' received an X Window System error.
This probably reflects a bug in the program.
The error was 'GLXBadContext'.
(Details: serial 328 error_code 160 request_code 149 minor_code 6)
(Note to programmers: normally, X errors are reported asynchronously;
that is, you will receive the error a while after causing it.
To debug your program, run it with the --sync command line
option to change this behavior. You can then get a meaningful
backtrace from your debugger if you break on the gdk_x_error() function.)
/opt/coot-0.8.9.1/bin/coot: line 284: 21931 Trace/breakpoint trap $coot_bin "$@"
guile: error while loading shared libraries: libltdl.so.3: cannot open shared object file: No such file or directory
A voir
- Il y a une erreur de nomage dans la version de coot qui vient avec phenix
0.9.8.1-> 0.8.9.1
Edited by Gildas Le Corguillé