bioinformatics
Projects with this topic
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Crawl any filesystem for genome data, providing one-click opening in IGV
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Scripts for pathway enumeration and random flux sampling of metabolite exchanges in microbial models.
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A d3 javascript SVG visualization of alternative splicing of randomly seeded exons from a random genome
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Python scripting for molecular dynamics simulation using GROMACS
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Master thesis - Deep learning-based pairwise alignment of protein sequences using transformer architecture.
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Bioinformatics - Pairwise sequence alignment using hidden Markov model.
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Bioinformatics - Segmentation of biofilm images using OpenCV library.
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Travail réalisé durant mon stage de Master 2 Bio-informatique.
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Run Oxford Nanopore MinION software in Docker containers
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Landing page of the DeePaC-F fungal database and models
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A Swiss Knife suite to manage pipeline environments
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Materials in this project correspond to the "Machine Learning for Bioinformatics" course Dr. Jacob Machado gave at UNC Charlotte during the Fall semester of 2022. See more details in the README.md file.
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Microbial Bioinformatics Hub is an open-source, collaborative space for researchers and students to find, learn and share knowledge, methods and tools related to analyzing microbiological data.
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A tree-based orthology inference program with additional functionality for reducing contamination.
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Alignment search tool that identifies similar proteomes
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