bioinformatics
Projects with this topic
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OTP, One Touch Pipeline, Documentation at https://one-touch-pipeline.gitlab.io/otp/
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Common Workflow Language - computational workflows
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Unix toolkit for feature analysis of alternative splicing events. Includes basic functions for manipulating tables, extraction of exon and intron-related features, discriminate feature analysis, motif maps for RNA-binding proteins, and more.
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Crawl any filesystem for genome data, providing one-click opening in IGV
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Scripts for pathway enumeration and random flux sampling of metabolite exchanges in microbial models.
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A d3 javascript SVG visualization of alternative splicing of randomly seeded exons from a random genome
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Python scripting for molecular dynamics simulation using GROMACS
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Master thesis - Deep learning-based pairwise alignment of protein sequences using transformer architecture.
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Run Oxford Nanopore MinION software in Docker containers
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A Swiss Knife suite to manage pipeline environments
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A tree-based orthology inference program with additional functionality for reducing contamination.
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Alignment search tool that identifies similar proteomes
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Environment-dependent evolution of digital organisms simulator.
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DuploMap is designed to improve precision and recall of long-read alignments in segmental duplications.
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CommunityYeastract database and web php front-end
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