Graph live update exception
Hi, I have an issue when updating graph with yade running 'live':
Unhandled exception in thread started by <function liveUpdate at 0x7f3782de2e18>
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ValueError Traceback (most recent call last)
/home/william/Yade/install/lib/x86_64-linux-gnu/yade-mybuild/py/yade/plot.py in liveUpdate(timestamp)
512 for ax in axes:
513 try:
--> 514 ax.relim() # recompute axes limits
515 ax.autoscale_view()
516 except RuntimeError: pass # happens if data are being updated and have not the same dimension at the very moment
/usr/lib/python3/dist-packages/matplotlib/axes/_base.py in relim(self, visible_only)
1936 for line in self.lines:
1937 if not visible_only or line.get_visible():
-> 1938 self._update_line_limits(line)
1939
1940 for p in self.patches:
/usr/lib/python3/dist-packages/matplotlib/axes/_base.py in _update_line_limits(self, line)
1799 Figures out the data limit of the given line, updating self.dataLim.
1800 """
-> 1801 path = line.get_path()
1802 if path.vertices.size == 0:
1803 return
/usr/lib/python3/dist-packages/matplotlib/lines.py in get_path(self)
955 """
956 if self._invalidy or self._invalidx:
--> 957 self.recache()
958 return self._path
959
/usr/lib/python3/dist-packages/matplotlib/lines.py in recache(self, always)
665 y = self._y
666
--> 667 self._xy = np.column_stack(np.broadcast_arrays(x, y)).astype(float)
668 self._x, self._y = self._xy.T # views
669
/usr/lib/python3/dist-packages/numpy/lib/stride_tricks.py in broadcast_arrays(*args, **kwargs)
247 args = [np.array(_m, copy=False, subok=subok) for _m in args]
248
--> 249 shape = _broadcast_shape(*args)
250
251 if all(array.shape == shape for array in args):
/usr/lib/python3/dist-packages/numpy/lib/stride_tricks.py in _broadcast_shape(*args)
182 # use the old-iterator because np.nditer does not handle size 0 arrays
183 # consistently
--> 184 b = np.broadcast(*args[:32])
185 # unfortunately, it cannot handle 32 or more arguments directly
186 for pos in range(32, len(args), 31):
ValueError: shape mismatch: objects cannot be broadcast to a single shapeMy update function is very standard and this happens randomly
plot.plots={'time':('totalStress_yy',
'normalContactStress_yy',
'shearContactStress_yy',
'normalLubrifStress_yy',
'shearLubrifStress_yy',
'kineticStress_yy'),
'time2':('phi'),
'time3':('totalStress_xy',
'normalContactStress_xy',
'shearContactStress_xy',
'normalLubrifStress_xy',
'shearLubrifStress_xy',
'kineticStress_xy'),
'time4': ('correction')};
plot.plot(subPlots=True);
def UpPlot():
global th_lastValue, m_stopOnStrain;
[normalContactStress, shearContactStress, normalLubrifStress, shearLubrifStress] = Law2_ScGeom_ImplicitLubricationPhys.getTotalStresses();
kineticStress = getTotalDynamicStress();
totalStress = normalContactStress + shearContactStress + normalLubrifStress + shearLubrifStress + kineticStress;
th_lastValue = th_lastValue[1:] + [abs(totalStress[1,1])];
phi = 1.-porosity();
if abs(O.cell.hSize[0,1]/O.cell.hSize[0,0]) > 1:
flipCell();
plot.addData(
totalStress = totalStress,
totalStress2 = getStress(),
kineticStress = kineticStress,
normalContactStress = normalContactStress,
shearContactStress = shearContactStress,
normalLubrifStress = normalLubrifStress,
shearLubrifStress = shearLubrifStress,
phi = phi,
iter = O.iter,
strain = O.cell.trsf,
time = O.time,
time2 = O.time,
time3 = O.time,
time4 = O.time,
correction = O.cell.velGrad[1][1]);