Blast sequenceserver not working
There is an issue with makeblastdb starting from v10 of covid19 db. Until v9, one can see "Nucleotides databases" and "Protein databases" which one can select. Starting from v10, these checkboxes disappear (so I guess the db we are serving is rubbish).
Test set-up
- log in to
s1.sfb.uit.no
then go to/srv/covid19_sequenceserver
- run
sudo ./s.sh 1.9
- this runs
makeblastdb
on/srv/mar/SarsCovid19DB/versioned_genomes/1.9
and outputs the db into./1.9
- it also starts up sequenceserver with the content of
./1.9
and serves it at https://corona-blast-test.sfb.uit.no/
- this runs
- start again with
./s.sh 1.10