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commands/migrate: always migrate all packages on every registry

Ratchanan Srirattanamet requested to merge personal/peat-psuwit/migrate-every-db into main

Having to specify if one wants to operate on all packages or on user DB only confuses both consumers (e.g. boot hook) and the author of the code (it was removing packages in @all db only for the first choice).

This commit removes that choice, and simplify the command's option to just 1: --for-user. This commit also make sure the old app are removed from all registries, not just the one the new app resides.

Related: #17 (closed)

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