... | ... | @@ -38,7 +38,7 @@ If the SeqScreen conda/container is not used, there are additional programs and |
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| **Workflow** | **Tool** | **Version** | **License** | **Source** | **Installation Notes** |
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| SeqMapper | Bowtie2 | 2.4.2 | GPLv3 | https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.4.2/bowtie2-2.4.2-linux-x86_64.zip | `unzip bowtie2-2.4.2-linux-x86_64.zip -d {installDir}/software` |
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| SeqMapper | Bowtie2 | 2.4.5 | GPLv3 | https://sourceforge.net/projects/bowtie-bio/files/bowtie2/2.4.5/bowtie2-2.4.5-linux-x86_64.zip | `unzip bowtie2-2.5.2-linux-x86_64.zip -d {installDir}/software` |
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| SeqMapper | RAPsearch | 2.24 | GPL | https://sourceforge.net/projects/rapsearch2/files/RAPSearch2.24_64bits.tar.gz | `tar -xvzf RAPSearch2.24_64bits.tar.gz -C {installDir}/software` then run `cd {installDir}/software/RAPSearch2.24_64bits && ./install`|
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| SeqMapper | HMMER | 3.3.2 | BSD 3-Clause License | http://eddylab.org/software/hmmer/hmmer.tar.gz | first run `tar -xvzf hmmer.tar.gz -C {installDir}/software` then run `cd {installDir}/software/hmmer-3.3/ && ./configure && make && make check && make install`|
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| Taxonomic Identification | BLASTN and BLASTX | 2.13.0 | Public Domain | https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.13.0+-x64-linux.tar.gz | `tar -xvzf ncbi-blast-2.13.0+-x64-linux.tar.gz -C {installDir}/software` |
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