... | ... | @@ -24,11 +24,11 @@ If you are using the SeqScreen conda/container, these do not need to be installe |
|
|
| bio | Latest (0.4.1+) | MIT License | Install via python version 3.7 with `python3 -m pip install --user bio` |
|
|
|
| bitarray | Latest (2.3.6+) | Python Software Foundation License (PSF) | Install via python version 3.7 with `python3 -m pip install --user bitarray` |
|
|
|
| intervaltree | Latest (3.0.2+) | Apache-2.0 | Install via python version 3.7 with `python3 -m pip install intervaltree` |
|
|
|
| py-xgboost | Latest (1.5.1) | Apache-2.0 | Install via python version 3.7 with `python3 -m pip install xgboost` |
|
|
|
| pandas | Latest (1.1.3) | BSD 3-Clause | Install via python version 3.7 with `python3 -m pip install pandas` |
|
|
|
| ete3 | Latest (3.1.2) | GPL v3| Install via conda with `conda install -c etetoolkit ete3`|
|
|
|
| ncbi-datasets-cli | 13.20.1 | Public domain | Install via conda with `conda install -c conda-forge ncbi-datasets-cli` |
|
|
|
| samtools | Latest (1.15.1) | MIT | Install via conda with `conda install -c bioconda samtools` |
|
|
|
| py-xgboost | Latest (1.5.1+) | Apache-2.0 | Install via python version 3.7 with `python3 -m pip install xgboost` |
|
|
|
| pandas | Latest (1.5.0+) | BSD 3-Clause | Install via python version 3.7 with `python3 -m pip install pandas` |
|
|
|
| ete3 | Latest (3.1.2+) | GPL v3| Install via conda with `conda install -c etetoolkit ete3`|
|
|
|
| ncbi-datasets-cli | Latest (13.20.1+) | Public domain | Install via conda with `conda install -c conda-forge ncbi-datasets-cli` |
|
|
|
| samtools | Latest (1.15.1+) | MIT | Install via conda with `conda install -c bioconda samtools` |
|
|
|
|
|
|
*This specific version of Nextflow has been tested to work offline with air-gapped Linux servers, if you are running SeqScreen offline.
|
|
|
|
... | ... | |