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Some schema fixes

Hugo Mercier requested to merge schema_fixes into dev_cerema

This adds some missing primary keys.

Other modifications on pt_stop :

  • id/node_id is reduced to only one field 'node_id'
  • 'geom' is removed (the geometry is carried by the node)

@aureliebousquet I've made the change quite bindly, tell me if I did not miss something

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