Support Heralded repeater chains & Overwrite link models

• Refactor of HubBuilder
• Refactor of ChainBuilder
• Notable refactor: creation of _get_link_builder_and_config that works for both qlinks and clinks. It also includes the overides if specified. Change made to both HubBuilder and ChainBuilder
• Overhaul of test_protocol_qlink.py , specifically:
  • Discard qubits only after receiver and sender protocol have finished their EPR request, this allows both event registrations to have a 2 qubit DM
  • Also apply qmemory decoherence to the peer memory when sampling the shared DM
  • Protocols now use references to each other for synchronizing EPR request submission (Instead of classical communication)
  • To enable the features above, a reference to the peer protocol must be set via attribute on each protocol
  • Removed recieved_classical attribute from event registration class
  • Added methods to event registration classes that allow for calculation of fidelity, rate, generation time and QBER.