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[WIP] add Dockerfile and brief explanation

Nick Waters requested to merge nickp60/mlplasmids:master into master

Hi @sirarredondo and @aschuerch! I have added a Dockerfile for the commandline part of the tool; Not sure if you would want to incorporate it to the main repo or not. If you do, It might be worth exploring how to dockerize the shiny app -- I know its possible, but I have never done it.

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