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Fixed basis_io-related issues in STM and Unfold, and fixed FDF initialization in Grimme.

Fixed basis_io-related issues in STM and Unfold, and fixed FDF initialization in Grimme.

(cherry picked from commit 99aab12b)

ea73adb1 Fixed basis_io error in utilities. 09dab9ec Set read_chemical_types under the node==0 if, in order to avoid clashes 2251dcbf Fixed too-late fdf initialization in Grimme

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