Feature: automate database downloading
changes:
- feature: Automatically download databases that are specified in the job-config. On first run of prophane, run
prophane init {DB_DIR}
whereDB_DIR
is an empty or non existant directory. To execute prophane, runprophane run {path-to-job-config}
. - breaking change: change command line interface (see above):
- prophane -> prophane.py run
- prophane --list-dbs -> prophane.py list-dbs
- prophane --list-styles -> prophane.py list-styles
- bump the db_schema version to 5
- task files now include the database version number instead of the md5sum:
tasks/{annot_type}_annot_by_{tool}_on_{db_type}.v{db_version}.task{taskid}.{ext}
associated issues
Closes #66 (closed), #41 (closed), #6 (closed)
Edited by Henning Schiebenhöfer