Replaced custom configuration format with JSON-based

data/atomic-solvation.json

data/ionic-atom-charges.json

data/scripts/dock-grid-based.json

data/scripts/dock-solvation-grid-based.json

data/scripts/dock-solvation.json

data/scripts/dock.json

data/scripts/dock.prm

data/scripts/dock_grid.prm

data/scripts/dock_solv.prm

data/scripts/dock_solv_grid.prm

data/scripts/minimise-solvation.json

data/scripts/minimise.json

data/scripts/minimise.prm

data/scripts/minimise_solv.prm

data/scripts/score-pmf.json

data/scripts/score-solvation.json

data/scripts/score.json

data/scripts/score.prm

data/scripts/score_pmf.prm

data/scripts/score_solv.prm