FFadj-metrics more information
I'm not sure if that's the right place to ask for help / expalanation so sorry in advance. I'd like to call orthologs based mainly on positional information. Thus, it would be useful to have more info on FF-Adj results (e.g. having an MCS length / identity written somewhere, maybe in ff-adj graph itself). Is it something that can be done?
I believe, this will also be very useful for searching for syntenic clusters in the genomes being compared and also understanding discrepancies between purely sequence-similarity-based methods and FF-Adj.
Again, apologies if this isn't a correct spot to place messages like this.
Kind regards, Grygoriy
Edited by Paul Klemm