fix altera and CI scheduled pipeline build problems for alst4, isim, zed_ise

After recent significant updates to the FPGA build engine for primitive namespace and transitive dependencies, three targets were still failing: alst4, isim, zed_ise. And the alst4 platform relates to the cycloneV platform in the works.

This MR fixes a variety of things that were preventing these platforms from building.

Changelog

bug(tools): build regressions on lesser used platforms not in normal pipeline.

Which issue(s) this MR closes

Closes #1307 (closed), #1317 (closed), https://gitlab.com/opencpi/osp/ocpi.osp.adrv936x/-/issues/27, #1323 (closed)