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Use `space%dim` instead of `box%dim` in several places

Micael Oliveira requested to merge space_grid_arguments into develop

Description

Replace gr with mesh in several function arguments and pass space to a few more places in order not to access box%dim.

Checklist

  • I have checked that my code follows the Octopus coding standards
  • I have added tests for all the new features added in this request.

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