This new HTML documentation is compiled from our separate markdown
files documenting different parts of the system. With this we can
now fluidly read and search the documentation like other ReadTheDocs
style documentation.

  * Remove the checked in files modules.rst and occam.rst.
    These are generated.

  * Create the new daemon-docs folder for building a HTML help site
    from our Markdown files.

  * Move files used to document the API into api-docs.

  * Have the Makefile generate developer documents by symlinking
    markdown from occam folders. Ideally we could reference these
    directly, but apparently Pphinx doesn't allow referencing files
    outside of the project folder. Some people are trying to remedy
    this with plugins, but none of the remedies are readily usable
    for our project. These docs use RTD style. Most likely this will
    be updated later to use our color scheme.

  * Stub in files to be added in future commits. This gives...