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Add MiMiCPy docs

Bharath Raghavan requested to merge mimicpy_docs into main
  1. Added changes to Installation section, included instructions for MiMiCPy
  2. Added MiMiCPy section, detailing:
  • an overview of MiMiCPy
  • a page on PrepQM (with explanations on the usage, options, selection keywords, VMD/PyMOL plugins)
  • a page on other sub-commands, with an explanation and description of options for each

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