| ... | ... | @@ -14,6 +14,22 @@ source activate exome-analysis |
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## Download CADD references
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```
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cd CADD-scripts
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cd pipeline/TOOLS/CADD-scripts
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./install.sh
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Do you want to install the virtual environments with all CADD dependencies via conda? (y)/n y
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Do you want to install CADD v1.6 for GRCh37/hg19? (y)/n y
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Do you want to install CADD v1.6 for GRCh38/hg38? (y)/n n
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Do you want to load annotations (Annotations can also be downloaded manually from the website)? (y)/n y
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Do you want to load prescored variants (Makes SNV calling faster. Can also be loaded/installed later.)? y/(n) y
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Do you want to load prescored variants for scoring with annotations (Warning: These files are very big)? y/(n) n
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Do you want to load prescored variants for scoring without annotations? y/(n) y
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Do you also want to load prescored InDels? We provide scores for well known InDels from sources like ClinVar, gnomAD/TOPMed etc. y/(n) y
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The following will be loaded: (disk space occupied)
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- Setup of the virtual environments including all dependencies for CADD v1.6 (10 GB).
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- Download CADD annotations for GRCh37-v1.6 (121 GB)
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- Download prescored SNV (without annotations) for GRCh37-v1.6 (78 GB)
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- Download prescored InDels (without annotations) for GRCh37-v1.6 (0.6 GB)
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Please make sure you have enough disk space available.
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Ready to continue? (y)/n y
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``` |
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\ No newline at end of file |
