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  • 32-create-a-seperate-workflow-for-genome-quality-taxonomy
  • checkm2
  • dev
  • dev-binRefiner
  • dev-minimap2
  • main default protected
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Created with Raphaël 2.2.026Mar76528Feb272625242131Jan301716137630Dec2524121012Nov9Oct742124Sep179Aug875231Jul302719181610985421Jun171423May2221201716109226Apr252219181716151211954129Mar272522212018151428Feb2723161510965231Jan30292624231817161517Oct420Sep1523Aug1817161013Jul1273Jun25May2322191817417Apr7527Mar10Feb876131Jan272619181613124319Dec16228Nov252398742131Oct19Aug18171615121098542129Jul282625201514131211764130Jun2821201413102131May302524201918171613922Apr211918151312118754125Mar22181614version bumpdevdevno humans allowedFix optional input for taxonomy_metadata. Add option to not output filtered readsAdd RRIDworking version nowchopper the longread chopperAdd sylph taxonomic profilerChange output names change docker image to and useable tar version for thissylph_profile-tax workflowsylph-tax workingadded sequali tool and testgitignore vscode space fileMerge branch 'dev' of gitlab.com:m-unlock/cwl into devMerge branch 'main' into 'dev'sylph-tax WIPmainmainsylph taxonomic profilerMerged dev into main, HUMAnN3 workflow upgradeMerge branch 'dev' into 'main'Devmarkupcheckm2checkm2default bloom offAdded built-in database commentsadd fasta extensionadd checkm2working versionbloom filter turned offrenaming and option to not run BUSCOfixmore add summarybin depths files is optionalcheckm2, need to testmore outputsworkflow for genome completeness and taxonomy, WIPngtax version bump, new docker container built, changed basecommandremove pilon polishing, should use pypolcaremove spades assembly from medaka polishing stepadd ngtax minimum_threshold"type" in rejectedASVAnnotationrejected_asv_annotation function added