Merge branch 'dev'

docker/Dockerfile

docker/build.sh

docker/run.sh

packed/workflow_RNAseq_kallisto_packed.cwl

packed/workflow_amplicon_longread_packed.cwl

packed/workflow_humann3_packed.cwl

packed/workflow_illumina_quality_packed.cwl

packed/workflow_kraken2-bracken_packed.cwl

packed/workflow_longread_quality_packed.cwl

packed/workflow_metagenomics_assembly_packed.cwl

packed/workflow_metagenomics_binning_packed.cwl

packed/workflow_microbial_annotation_packed.cwl

packed/workflow_prepare_fasta_db_packed.cwl

tools/bakta/bakta.cwl

tools/bbmap/prepare_fasta_db.cwl

tools/eggnog/eggnog-mapper.cwl

tools/falco/falco.cwl

tools/fastq/fastq_to_fasta.cwl

tools/fastq/interleave_fastq.cwl

tools/gtdbtk/gtdbtk_classify_wf.cwl