Fix conda env (!918) · Merge requests · Institut Français de Bioinformatique / usegalaxy.fr / infrastructure

Anthony Bretaudeau requested to merge galconda_env into preprod Dec 11, 2023

Galaxy was down this morning, with a strange error:

Error: /shared/ifbstor1/software/miniconda/envs/_galaxy_/lib/python3.11/lib-dynload/_contextvars.cpython-311-x86_64-linux-gnu.so: file too short

For some reason, this file was empty, probably due to a broken conda package for python 3.11.0.

Reinstalled the conda env manually, with the change included in this MR.

No longer need for R I guess (creates conflicts with python 3.11.6) + install non-broken, newer 3.11 version

Fix conda env