Fix script path
Should fix:
emergen-airflow@clust-emergen-workflow:~$ bash /opt/emergen-workflow-scripts/pangolin_nextclade_pipeline/pangolin_nextclade_pipeline_partial_sequences.sh toto
sbatch: error: Unable to open file /shared/home/emergen-airflow/download_partial_sequences_emergendb.sh
2021-12-03 18:13:00 [pangolin_nextclade_pipeline_partial_sequences] Submitted job (downloading partial sequences from EMERGENDB)
sbatch: error: Unable to open file /shared/home/emergen-airflow/split_fasta_file.sh
2021-12-03 18:13:00 [pangolin_nextclade_pipeline_partial_sequences] Submitted job (splitting fasta file containing all sequences)
sbatch: error: Unable to open file /shared/home/emergen-airflow/download_nextclade_reference_files.sh
2021-12-03 18:13:00 [pangolin_nextclade_pipeline_partial_sequences] Submitted job (downloading Nextclade reference files)
sbatch: error: Unable to open file /shared/home/emergen-airflow/run_nextclade.sh
2021-12-03 18:13:00 [pangolin_nextclade_pipeline_partial_sequences] Submitted job array (running Nextclade)
sbatch: error: Unable to open file /shared/home/emergen-airflow/run_pangolin.sh
2021-12-03 18:13:00 [pangolin_nextclade_pipeline_partial_sequences] Submitted job array (running Pangolin)
sbatch: error: Unable to open file /shared/home/emergen-airflow/merge_nextclade_results.sh
2021-12-03 18:13:00 [pangolin_nextclade_pipeline_partial_sequences] Submitted job (merging Nextclade results)
sbatch: error: Unable to open file /shared/home/emergen-airflow/merge_pangolin_results.sh
2021-12-03 18:13:00 [pangolin_nextclade_pipeline_partial_sequences] Submitted job (merging Pangolin results)
sbatch: error: Unable to open file /shared/home/emergen-airflow/upload_pangolin_nextclade_results_emergendb.sh
2021-12-03 18:13:00 [pangolin_nextclade_pipeline_partial_sequences] Submitted job (uploading Pangolin & Nextclade results to EMERGENDB)
sbatch: error: Unable to open file /shared/home/emergen-airflow/cleanup.sh
2021-12-03 18:13:00 [pangolin_nextclade_pipeline_partial_sequences] Submitted job (clean up working dir)