Draft: Add apptainer/squeezemate/1.6.3
Because a config for the databank have to be done configure_nodb.pl
in the container, it's trick!
1- [Change the db path] in the image.def
export SQUEEZEMETA_DB=/shared/bank/squeezemeta/2024-02-20/db/:/shared/bank/squeezemeta/2024-02-20/db/
2- Build to get download_databases.pl
apptainer build image.sif image.def
3- Download the databases ~400GB
./image.sif /opt/SqueezeMeta-1.6.3/utils/install_utils/download_databases.pl /shared/bank/squeezemeta/2024-02-20/
4- Build again the final container
apptainer build --bind /shared/bank/squeezemeta/2024-02-20/db/:/shared/bank/squeezemeta/2024-02-20/db/ --force image.sif image. def
So how to automatize that?