Errors first install r-packages
L'installation des r-packages (sur le cluster du MCIA) se stabilise avec les erreurs ci-dessous
r-3.5.1
-
'clues'
"Error: package 'clues' is not available (for R version 3.5.1)"
-
'Seurat'
"Error: package 'Seurat' is not available (for R version 3.5.1)"
-
'scran'
Installing package(s) 'scran'\nalso installing the dependency 'BiocNeighbors' ERROR: compilation failed for package 'BiocNeighbors'
r-3.6.3
-
'Seurat'
"Error: package 'Seurat' is not available (for R version 3.6.3)"
-
'scater'
Installing package(s) 'scater'\nalso installing the dependencies 'BiocNeighbors', 'BiocSingular'
ERROR: compilation failed for package 'BiocNeighbors'
-
'scran'
Installing package(s) 'scran'\nalso installing the dependencies 'scater', 'BiocNeighbors', 'BiocSingular'
ERROR: compilation failed for package 'BiocNeighbors'
-
'batchelor'
ERROR: compilation failed for package 'BiocNeighbors'
-
'IlluminaHumanMethylationEPICanno.ilm10b4.hg19'
ERROR: failed to lock directory '/gpfs/softs/contrib/ifb/miniconda3/envs/r-3.6.3/lib/R/library' for modifying\nTry removing '/gpfs/softs/contrib/ifb/miniconda3/envs/r-3.6.3/lib/R/library/00LOCK-IlluminaHumanMethylationEPICanno.ilm10b4.hg19'
-
'ChAMP'
Installing package(s) 'ChAMP'\nalso installing the dependencies 'IlluminaHumanMethylationEPICanno.ilm10b4.hg19', 'JADE', 'ChAMPdata', 'FEM', 'DMRcate', 'Illumina450ProbeVariants.db', 'IlluminaHumanMethylationEPICmanifest', 'prettydoc', ERROR: failed to lock directory '/gpfs/softs/contrib/ifb/miniconda3/envs/r-3.6.3/lib/R/library' for modifying\nTry removing '/gpfs/softs/contrib/ifb/miniconda3/envs/r-3.6.3/lib/R/library/00LOCK-IlluminaHumanMethylationEPICanno.ilm10b4.hg19'
-
'mdeloger/seuratv3wizard'
Error: package 'Seurat' is not available (for R version 3.6.3)
r-4.0.2
-
'RausellLab/CelliD'
ERROR: this R is version 4.0.2, package 'CelliD' requires R >= 4.1
-
'tobiasgf/lulu'
Error: Failed to install 'unknown package' from GitHub:\n Line starting 'E ...' is malformed!
-
'ProMetIS/ProMetIS'
"Error: Failed to install 'unknown package' from GitHub:\n HTTP error 404.\n Not Found\n\n Did you spell the repo owner
('ProMetIS') and repo name ('ProMetIS') correctly?\n - If spelling is correct, check that you have the required permissions to access the repo.
r-4.0.3
-
'ChAMP'
"ERROR: failed to lock directory '/gpfs/softs/contrib/ifb/miniconda3/envs/r-4.0.3/lib/R/library' for modifying" "Try removing '/gpfs/softs/contrib/ifb/miniconda3/envs/r-4.0.3/lib/R/library/00LOCK-IlluminaHumanMethylationEPICanno.ilm10b4.hg19'"
-
'IlluminaHumanMethylationEPICanno.ilm10b4.hg19'
ERROR: failed to lock directory '/gpfs/softs/contrib/ifb/miniconda3/envs/r-4.0.3/lib/R/library' for modifying\nTry removing '/gpfs/softs/contrib/ifb/miniconda3/envs/r-4.0.3/lib/R/library/00LOCK-IlluminaHumanMethylationEPICanno.ilm10b4.hg19'
Edited by David Benaben