... | ... | @@ -15,5 +15,5 @@ The optimization parameters file specifies additional options for the run. It is |
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- **memory-length**: length of the memory for the ScipyLBFGS estimator. Large values can induce a high memory use. Default is 10.
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- **state-file**: if a state-file is specified and the file exists, Deformetrica will attempt to restart the computation from this state file. If it does not exist, Deformetrica will run normally and save the state in this file. If a state-file is not specified, the state will be saved in the output folder under the name `pydef-state.p`.
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- **use-rk2**: A Runge-Kutta 2 scheme is used for integration of the deformation if it is On. A simple Euler scheme is used otherwise. Default is Off.
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- **momenta-proposal-std**, **onset-age-proposal-std**, **log-acceleration-proposal-std**, **sources-proposal-std**: standard deviation of the proposal distributions for the McmcSaem algorithm. See [Longitudinal Atlas](2_tutorials/2.7_longitudinal_atlas).
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- **momenta-proposal-std**, **onset-age-proposal-std**, **log-acceleration-proposal-std**, **sources-proposal-std**: standard deviation of the proposal distributions for the McmcSaem algorithm. See [Longitudinal Atlas](../2_tutorials/2.7_longitudinal_atlas).
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- **freeze-v0**, **freeze-p0**, **freeze-modulation-matrix**, **freeze-time-shift-variance**, **freeze-log-acceleration-variance**, **freeze-reference-time**, **freeze-noise-variance**: whether to freeze some of the variables in a longitudinal atlas. |