feat: default bundle to include all branches/tags if no version is specified

• Default bundle to include all branches/tags if no version is specified.
  • This was completed by switching to utilize the clone_from/mirror instead of git init/fetch. The basis argument will limit what is actually bundled
• Update integration test to verify more thoroughly by cloning the bundle and verifying branches/tags exist. Additional future updates could be completed to verify the cloned bundle is the same as the remote repo. #2

Before:

After:

Checklist

• documentation is changed or added in ./docs
• unit tests updated to test changes

Description

Context

When specifying a repo without a specific version no branches were included in the bundle. Only the HEAD was included in the bundle.

Intent

The default now is that all branches will be included in the bundle