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Updated date
pseudo calling criteria using reference-corresponding coordinates
hybran!31
· created
Apr 14, 2023
by
Afif Elghraoui
master
Merged
5
updated
Apr 21, 2023
Resolve "Identification and resolution of conflicting annotations that are named differently"
hybran!27
· created
Feb 08, 2023
by
Afif Elghraoui
master
Merged
1
updated
Mar 01, 2023
Mtase updates
Mtb-H37Rv-annotation!3
· created
Feb 27, 2023
by
Afif Elghraoui
Merged
Approved
updated
Feb 27, 2023
Adds a check for mismatches in genes with suspicious 'good_starts/stops'.
hybran!29
· created
Feb 23, 2023
by
Theron James
master
Merged
updated
Feb 24, 2023
annomerge: rewrite process_split_genes for postprocessing ab initio gene fragments
hybran!28
· created
Feb 23, 2023
by
Afif Elghraoui
master
Merged
updated
Feb 23, 2023
Implementation of coord_check function
hybran!26
· created
Feb 03, 2023
by
Theron James
master
Merged
updated
Feb 15, 2023
Overhaul of postprocessed pseudo genes.
hybran!25
· created
Jan 24, 2023
by
Theron James
master
Merged
6
updated
Jan 25, 2023
Resolve "L_##### not always replaced with ORF#### names"
hybran!23
· created
Jun 22, 2022
by
Afif Elghraoui
master
Merged
updated
Nov 17, 2022
Resolve "error loading multi-contig reference annotation for prodigal coordinate correction"
hybran!24
· created
Sep 20, 2022
by
Afif Elghraoui
master
Merged
updated
Nov 10, 2022
phylo/Makefile: don't make vcf-corrections a PHONY target
convergent-het-sv!2
· created
Aug 24, 2022
by
Afif Elghraoui
Merged
updated
Aug 24, 2022
Resolve "annomerge pair resolution is not always comparing from different sources"
hybran!22
· created
Apr 27, 2022
by
Afif Elghraoui
master
Merged
updated
Jun 08, 2022
Proper handling of multi-fasta inputs
hybran!21
· created
Apr 27, 2022
by
Afif Elghraoui
master
Merged
updated
Apr 27, 2022
single-pass prokka
hybran!20
· created
Mar 23, 2022
by
Afif Elghraoui
master
Merged
1
updated
Apr 22, 2022
Assign reference gene names in the case of truncation events
hybran!19
· created
Feb 28, 2022
by
Afif Elghraoui
master
Merged
2
updated
Mar 04, 2022
Locus tag prefixes
hybran!18
· created
Feb 22, 2022
by
Afif Elghraoui
master
Merged
updated
Feb 22, 2022
Generalize for non-TB bacteria
hybran!17
· created
Feb 21, 2022
by
Afif Elghraoui
master
Merged
updated
Feb 21, 2022
Resolve "novelty_report: query_coverage sometimes > 100%"
hybran!16
· created
Nov 09, 2021
by
Afif Elghraoui
master
Merged
updated
Nov 12, 2021
Resolve "remove criterion regarding hypothetical genes from prokka-no-reference"
hybran!15
· created
Nov 05, 2021
by
Theron James
publication
master
Merged
updated
Nov 08, 2021
Resolve "duplicate genes in reference create spurious multigene clusters"
hybran!14
· created
Oct 27, 2021
by
Afif Elghraoui
publication
master
Merged
updated
Oct 29, 2021
Resolve "make the enforcement of %-identity/coverage thresholds on RATT-transferred annotations optional"
hybran!13
· created
Oct 19, 2021
by
Afif Elghraoui
publication
master
Merged
2
updated
Oct 28, 2021
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