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Implement IUPAC naming option for methylene hydrogens

TyeGonzalez requested to merge iupac-hydrogen-naming into main

Adds a command line option (--iupacff) where so that when adding hydrogens using hydrogen database, if case=6 (i.e. methylene protons), start numbering from 2 rather than 1.

Edited by TyeGonzalez

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