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fixing and updating link to third-party in user-guide and how-to pages

alevil-gmx requested to merge broken_link into release-2024

Working in user guide and how-to of manual.gromacs.org on updating third party link.

  • Link and connect text to PRODGR and MKTOP tools have been removed.
  • not-up-to-date tutorials have been replaced with new tutorial link.
  • broken link for MDtraj, Swiss PDC viewer have been fixed
  • broken link for ROCm (https://rocm.github.io/ broken ) have been replace with https://rocm.docs.amd.com/en/latest/

link to issue #4935 (closed)

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