Skip to content
GitLab
    • GitLab: the DevOps platform
    • Explore GitLab
    • Install GitLab
    • How GitLab compares
    • Get started
    • GitLab docs
    • GitLab Learn
  • Pricing
  • Talk to an expert
  • /
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
    • Contribute to GitLab
    • Switch to GitLab Next
    Projects Groups Topics Snippets
  • Register
  • Sign in
  • GROMACS GROMACS
  • Project information
    • Project information
    • Activity
    • Labels
    • Members
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributor statistics
    • Graph
    • Compare revisions
    • Locked files
  • Issues 315
    • Issues 315
    • List
    • Boards
    • Service Desk
    • Milestones
    • Iterations
    • Requirements
  • Merge requests 93
    • Merge requests 93
  • Deployments
    • Deployments
    • Releases
  • Packages and registries
    • Packages and registries
    • Package Registry
    • Container Registry
    • Infrastructure Registry
  • Monitor
    • Monitor
    • Incidents
  • Analytics
    • Analytics
    • Value stream
    • Code review
    • Insights
    • Issue
    • Repository
  • Wiki
    • Wiki
  • Snippets
    • Snippets
  • Activity
  • Graph
  • Create a new issue
  • Commits
  • Issue Boards
Collapse sidebar
  • GROMACS
  • GROMACSGROMACS
  • Issues
  • #2911
Closed
Open
Issue created Mar 29, 2019 by Paul Bauer@acmnpvMaintainer

grompp cryptic error message - Redmine #2911

Archive from user: Cathrine Bergh

I got a syntax error from one of my files when running gromp The message was a bit cryptic. Would it be possible to specify e.g. what character caused the problem? The solution was to change ’ into ", but that took a while to realize…


Program: gmx grompp, version 2018
Source file: src/gromacs/gmxpreprocess/topio.cpp (line 705)

Fatal error:
Syntax error - File topol_Protein_chain_B.itp, line 56256
Last line read:
‘#include ’posre_Protein_chain_B.itp’ ’

For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
———————————————————————————-

(from redmine: issue id 2911, created on 2019-03-29 by gmxdefault, closed on 2019-06-11)

  • Changesets:
    • Revision 77e2a317 by Paul Bauer on 2019-06-11T07:34:09Z:
Extend information for gmxcpp syntax error.

Fixes #2911

Change-Id: I6d22c95d32993d5d640bf20031bfdc9c04c99604
Assignee
Assign to
Time tracking