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feat: add run_command tool to fix_pipeline flow

Roman Eisnerrequested to merge
re/add-run-command-fix-pipeline into main

What does this merge request do and why?

Adds the run_command tool to the execution step in the fix_pipeline flow, to allow the agent to check if changes fix issues with unit tests, linting, etc.

How to set up and validate locally

  1. Set up Duo Agent Platform
  2. Set up the Flow Registry in your GDK
  3. Run a Fix Pipeline Flow
  4. Check your Flow Output in Automate > Agent sessions

Merge request checklist

  • Tests added for new functionality. If not, please raise an issue to follow up.
  • Documentation added/updated, if needed.
  • If this change requires executor implementation: verified that issues/MRs exist for both Go executor and Node executor or confirmed that changes are backward-compatible and don't break existing executor functionality.

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